- rust NLR analyzer which fetches and mines resistance genes.
- aligns your resistance genes to in-hosted resistance genes from previously published studies.
- implements a deep learning model based on the Neural Network to filter the alignment having the same sites and then use the expression labels and prediction of the sequences based on the expression.So an expression to sequences classifier using the libtorch.
- python directory contains the python version.
- libtorch should be present.
cargo build
NLRanalyzer.
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Author Gaurav Sablok,
Email: codeprog@icloud.com
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Usage: NLRanalyzer <COMMAND>
Commands:
miner NLRResistanceMiner
fetcher NLRResistanceFetcher
help Print this message or the help of the given subcommand(s)
Options:
-h, --help Print help
-V, --version Print version
Gaurav Sablok codeprog@icloud.com