- rust based alignment kit for genome, metagenome, pangenome. It gives you all the alignments functionalities and also gives you colour coded alignment for each alignment and sub-alignment region. check the alignment view and alignment-clipview.
cargo build
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rust-phylogenomicstools
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Author Gaurav Sablok,
Email: codeprog@icloud.com
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Usage: phyloEvolve <COMMAND>
Commands:
alignmerge merge all the alignment into a single string
alignmergeinterval alignmerge the specific region of the alignment
same-alignment remove same alignment
alignmentstats alignmentstats
filter-site filter the sites with the given base
filter-all removes same bases across all the alignment
filter-block collineratiy block based alignment filtering
alignment-view allows for the view of the alignment
alignment-clipview allows for the embedded view of the clipped Alignment
sitereplace replace the specific sites based on the site probability
protein-stat estimate the protein stats
indelreplace indel substituter
motif-search search for the specific protein and the nucleotide motifs
up-down-stream specific part of the alignment and the upstream and the downstream of alignment
site-alignment extract the places of the specified base for LD analysis
plotter frequency plot for the alignments
nucleotidecolour color coded map
proteomecolour proteome heatmap
help Print this message or the help of the given subcommand(s)
Options:
-h, --help Print help
-V, --version Print version
Gaurav Sablok
codeprog@icloud.com