@@ -15,7 +15,7 @@ To use the module to read a file in BAM format, create a
1515 import pysam
1616 samfile = pysam.AlignmentFile("ex1.bam", "rb")
1717
18- Once a file is opened you can iterate over all of the read mapping to
18+ Once a file is opened you can iterate over all of the reads mapping to
1919a specified region using :meth: `~pysam.AlignmentFile.fetch `. Each
2020iteration returns a :class: `~pysam.AlignedSegment ` object which
2121represents a single read along with its fields and optional tags::
@@ -103,7 +103,7 @@ tabix indexed tab-separated file formats with genomic data::
103103:class: `~pysam.TabixFile ` implements lazy parsing in order to iterate
104104over large tables efficiently.
105105
106- More detailed usage instructions is at :ref: `usage `.
106+ More detailed usage instructions are available at :ref: `usage `.
107107
108108.. note ::
109109
@@ -200,7 +200,6 @@ FASTQ files
200200.. autoclass :: pysam.FastxFile
201201 :members:
202202
203-
204203.. autoclass :: pysam.FastqProxy
205204 :members:
206205
@@ -214,10 +213,10 @@ VCF/BCF files
214213.. autoclass :: pysam.VariantHeader
215214 :members:
216215
217- .. autoclass :: pysam.VariantRecord
216+ .. autoclass :: pysam.VariantHeaderRecord
218217 :members:
219218
220- .. autoclass :: pysam.VariantHeaderRecord
219+ .. autoclass :: pysam.VariantRecord
221220 :members:
222221
223222HTSFile
0 commit comments