fix conda env

Author: jan-janssen

.github/workflows/pipeline.yml

@@ -22,6 +22,9 @@ jobs:
       shell: bash -l {0}
       run: |
         sudo apt-get install -y $(cat apt.txt)
+        conda env create -n preprocessing -f source/envs/preprocessing.yaml -y
+        conda env create -n processing -f source/envs/processing.yaml -y
+        conda env create -n postprocessing -f source/envs/postprocessing.yaml -y
         verdi presto --profile-name pwd
         echo -e 'from aiida import load_profile\nload_profile()\n\nfrom python_workflow_definition.aiida import load_workflow_json\n\n\nif __name__ == "__main__":\n    workgraph = load_workflow_json(file_name="workflow.json")\n    workgraph.run()' > test_with_aiida.py
         python test_with_aiida.py
@@ -42,6 +45,9 @@ jobs:
       shell: bash -l {0}
       run: |
         sudo apt-get install -y $(cat apt.txt)
+        conda env create -n preprocessing -f source/envs/preprocessing.yaml -y
+        conda env create -n processing -f source/envs/processing.yaml -y
+        conda env create -n postprocessing -f source/envs/postprocessing.yaml -y
         echo -e 'from jobflow.managers.local import run_locally\nfrom python_workflow_definition.jobflow import load_workflow_json\n\n\nif __name__ == "__main__":\n    flow = load_workflow_json(file_name="workflow.json")\n    print(run_locally(flow))' > test_with_jobflow.py
         python test_with_jobflow.py
 
@@ -61,5 +67,8 @@ jobs:
       shell: bash -l {0}
       run: |
         sudo apt-get install -y $(cat apt.txt)
+        conda env create -n preprocessing -f source/envs/preprocessing.yaml -y
+        conda env create -n processing -f source/envs/processing.yaml -y
+        conda env create -n postprocessing -f source/envs/postprocessing.yaml -y
         echo -e 'from python_workflow_definition.pyiron_base import load_workflow_json\n\n\nif __name__ == "__main__":\n    delayed_object_lst = load_workflow_json(file_name="workflow.json")\n    print(delayed_object_lst[-1].pull())' > test_with_pyiron.py
         python test_with_pyiron.py