Skip to content

remove checking of loader partition column offsets against what is present in vid mapping #85

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 1 commit into from
Mar 23, 2025
Merged

remove checking of loader partition column offsets against what is present in vid mapping #85

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
6 changes: 0 additions & 6 deletions genomicsdb/scripts/genomicsdb_common.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -74,12 +74,6 @@ def parse_vidmap_json(vidmap_file, intervals=None):
else: # Generated with vcf2genomicsdb_init
contig_name = contig["name"]
contig_elem = contig
# Sanity check of column offsets
if column_offset != contig_elem["tiledb_column_offset"]:
logging.critical(
f"vidmap file({vidmap_file}) has wrong column offset for {contig_name}. Cannot process vidmap file from contigs({contig_name})" # noqa
)
break
contigs_map[contig_name] = contig_elem
column_offset += contig_elem["length"]
if all_intervals:
Expand Down
Loading